Apple Pie Protein Muffins Recipe
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There’s something truly magical about a warm muffin that tastes like your favorite dessert, but packs a powerful punch of protein to fuel your day — and that’s exactly what you get with this Apple Pie Protein Muffins Recipe. Combining cozy autumnal spices with juicy chunks of apple and a healthy dose of protein, these muffins are perfect for breakfast, a snack, or even dessert. They’re moist, flavorful, and have just the right balance of sweetness and spice to brighten up any morning or midday slump.

Ingredients You’ll Need
You don’t need a long list of fancy items to make these Apple Pie Protein Muffins come together beautifully; just simple, wholesome ingredients that each play a vital role in achieving the perfect taste, texture, and warmth in every bite.
- Rolled oats (1 1/2 cups): Ground into oat flour, they provide natural fiber and a hearty base for the muffins.
- Vanilla protein powder (1 cup): Adds a creamy sweetness and packs a hefty protein boost to keep you energized.
- Baking powder (1 teaspoon): Helps the muffins rise up light and fluffy.
- Baking soda (1 teaspoon): Works with the acidity in yogurt and applesauce for a perfect crumb.
- Ground cinnamon (1 1/2 teaspoons): Brings that unmistakable cozy warmth reminiscent of a classic apple pie.
- Ground nutmeg (1/4 teaspoon): Adds a subtle earthy spice that deepens the aroma.
- Salt (1/4 teaspoon): Balances sweetness and enhances all the spices.
- Large eggs (2): Bind ingredients and add richness for tender muffins.
- Unsweetened applesauce (1/2 cup): Keeps muffins moist and adds natural sweetness without extra sugar.
- Plain Greek yogurt (1/2 cup): Provides tang, moisture, and a boost of protein.
- Maple syrup or honey (1/4 cup): Adds natural sweetness with a touch of richness.
- Vanilla extract (1 teaspoon): Enhances the vanilla notes and ties all flavors together.
- Finely diced apple, peeled or unpeeled (1 cup): Juicy bursts of fresh apple deliver texture and that essential apple pie feeling.
- Melted coconut oil or butter (2 tablespoons): Adds fat for tenderness and flavor.
How to Make Apple Pie Protein Muffins Recipe
Step 1: Prepare Your Oven and Muffin Tin
Start by preheating your oven to 350 degrees Fahrenheit. Line a muffin tin with paper liners to ensure a smooth release, or lightly grease it with a little coconut oil or butter. This preparation ensures your muffins won’t stick and will have a beautiful finish.
Step 2: Turn Oats into Flour
Place the rolled oats into a blender or food processor and blitz until they become a fine oat flour. This step creates the perfect base for your muffins, giving them a wholesome texture while keeping them light.
Step 3: Mix Dry Ingredients
Transfer your freshly made oat flour into a large bowl. Whisk in the vanilla protein powder, baking powder, baking soda, cinnamon, nutmeg, and salt. This blend of dry ingredients is where the magic of rising and flavor begins.
Step 4: Combine Wet Ingredients
In a separate bowl, whisk together the eggs, unsweetened applesauce, Greek yogurt, maple syrup or honey, vanilla extract, and melted coconut oil. The wet mixture brings moisture, flavor, and protein, ensuring your muffins are tender and delicious.
Step 5: Bring It All Together
Pour the wet ingredients into the bowl with dry ingredients and gently stir until just combined—be careful not to over-mix, or your muffins could turn out dense. Then, fold in the finely diced apple, evenly distributing the juicy sweetness throughout the batter.
Step 6: Bake to Perfection
Divide the batter evenly among the muffin cups, filling each about three-quarters full. Pop them into the preheated oven and bake for 18 to 22 minutes. You’ll know they’re ready when a toothpick inserted in the center comes out clean and the tops spring back lightly when touched.
Step 7: Cooling Time
Let your muffins cool in the pan for about five minutes—they need a few minutes to set before you transfer them to a wire rack to cool completely. This cooling helps them maintain their shape and texture.
How to Serve Apple Pie Protein Muffins Recipe

Garnishes
These muffins shine all on their own, but a simple dusting of powdered cinnamon or a light drizzle of melted almond butter on top can take them to the next level. Adding a small dollop of Greek yogurt with a sprinkle of cinnamon on the side makes for a lovely presentation and extra creaminess.
Side Dishes
Pair your Apple Pie Protein Muffins with a fresh cup of chai tea or a warm latte to complement the spices perfectly. A side of fresh fruit, such as crisp apple slices or a handful of berries, rounds out the meal beautifully and keeps it light yet satisfying.
Creative Ways to Present
For a fun breakfast platter, serve the muffins alongside small jars of nut butter, honey, and yogurt so everyone can customize. You could even turn them into mini morning parfaits by layering chunks of muffins with Greek yogurt and cinnamon-spiced stewed apples in clear glasses for an inviting twist.
Make Ahead and Storage
Storing Leftovers
These apple pie protein muffins stay fresh and moist in an airtight container when refrigerated for up to five days. That means you can make a batch on the weekend and enjoy them all week long without sacrificing taste or texture.
Freezing
If you want to make a larger batch to save time, these muffins freeze beautifully. Wrap each muffin individually in plastic wrap or place them in a freezer-safe bag, and they’ll keep well for up to three months. When you want a quick breakfast, just grab a muffin or two from the freezer.
Reheating
To reheat, simply pop a frozen or refrigerated muffin in the microwave for 20 to 30 seconds or warm it in a toaster oven for a few minutes until heated through. This brings the spices and apple flavors back to life and restores the soft, comforting texture you want.
FAQs
Can I use a different type of protein powder?
Absolutely! Vanilla or cinnamon-flavored protein powder works best to enhance the apple pie scent, but feel free to experiment with your favorite flavors. Just keep in mind how the taste might shift with chocolate or unflavored powders.
Do I have to peel the apples?
Not at all. Leaving the peel on adds extra fiber and color, and it’s completely fine to use peeled or unpeeled apples depending on your preference and the texture you like.
Can I make these muffins vegan?
You can! Swap the eggs with flax or chia egg substitutes and use a plant-based yogurt along with vegan protein powder and plant-based butter or coconut oil. The texture might be a little different, but they’ll still be delicious.
How can I make these muffins less sweet?
If you prefer muffins with less sweetness, reduce the maple syrup or honey slightly or use unsweetened applesauce. The cinnamon and nutmeg will still provide plenty of flavor to keep them interesting.
Are these muffins suitable for meal prep?
Definitely! Their high protein content and balanced ingredients make them a perfect grab-and-go option for busy mornings. Just store them properly and they’ll keep well to fuel your week.
Final Thoughts
If you’re looking for a breakfast that feels indulgent but supports your nutrition goals, this Apple Pie Protein Muffins Recipe is a total game-changer. It’s simple to make, packed with flavor, and the perfect way to enjoy a little apple pie magic anytime. I encourage you to try it out soon and see how these muffins become a fast favorite in your kitchen!
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Apple Pie Protein Muffins Recipe
- Total Time: 30 minutes
- Yield: 12 muffins 1x
Description
Delicious and healthy Apple Pie Protein Muffins perfect for a nutritious breakfast or snack. Packed with protein and wholesome ingredients like oats, Greek yogurt, and diced apples, these muffins offer a balanced blend of flavors and nutrients to keep you energized throughout the day.
Ingredients
Dry Ingredients
- 1 1/2 cups rolled oats
- 1 cup vanilla protein powder
- 1 teaspoon baking powder
- 1 teaspoon baking soda
- 1 1/2 teaspoons ground cinnamon
- 1/4 teaspoon ground nutmeg
- 1/4 teaspoon salt
Wet Ingredients
- 2 large eggs
- 1/2 cup unsweetened applesauce
- 1/2 cup plain Greek yogurt
- 1/4 cup maple syrup or honey
- 1 teaspoon vanilla extract
- 2 tablespoons melted coconut oil or butter
- 1 cup finely diced apple, peeled or unpeeled
Instructions
- Preheat and Prepare: Preheat the oven to 350 degrees Fahrenheit and line a muffin tin with paper liners or lightly grease it to prevent sticking.
- Make Oat Flour: In a blender or food processor, blend the rolled oats until they reach a fine flour consistency.
- Combine Dry Ingredients: Transfer the oat flour to a large bowl and whisk in the vanilla protein powder, baking powder, baking soda, ground cinnamon, ground nutmeg, and salt to ensure even distribution of leaveners and spices.
- Mix Wet Ingredients: In a separate bowl, whisk together the eggs, unsweetened applesauce, plain Greek yogurt, maple syrup (or honey), vanilla extract, and melted coconut oil until well combined.
- Combine Wet and Dry: Add the wet mixture to the dry ingredients and stir gently until just combined, being careful not to overmix to keep the muffins tender.
- Add Apples: Fold in the finely diced apples carefully to distribute evenly without overworking the batter.
- Fill Muffin Cups: Divide the batter evenly among the prepared muffin cups, filling each about three-quarters full for optimal rise and shape.
- Bake: Place the muffin tin in the oven and bake for 18 to 22 minutes, or until the muffins are set and a toothpick inserted into the center comes out clean.
- Cool: Allow the muffins to cool in the pan for 5 minutes before transferring them to a wire rack to cool completely, preserving their texture and flavor.
Notes
- Use vanilla or cinnamon-flavored protein powder to enhance the apple pie flavors in the muffins.
- Store muffins in the refrigerator for up to 5 days to maintain freshness.
- For longer storage, freeze the muffins and thaw before serving.
- Prep Time: 10 minutes
- Cook Time: 20 minutes
- Category: Breakfast
- Method: Baking
- Cuisine: American
